Cadwell CR, Bhaduri A, Mostajo-Radji M, Keefe MG, Nowakowski TJ. Development and Arealization of the Cerebral Cortex. in press, Neuron

Keefe MG, Nowakowski TJ. A cookbook for neuronal flavors. Nature. 2019; 573:36-37; PMID:31481767

Linsley JW, Tripathi A, Epstein I, Schmunk G, Mount E, Campioni M, Oza V, Barch M, Javaherian A, Nowakowski TJ, Samsi S, Finkbeiner S. Automated four-dimensional long term imaging enables single cell tracking within organotypic brain slices to study neurodevelopment and degeneration. Commun Biol. 2019. PMID: 31069265

Nowakowski TJ*,**, Rani N*, Golkaram M*, Zhou HR*, Alvarado B, Huch K, West JA, Leyrat A, Pollen AA, Kriegstein AR, Petzold LR, Kosik KS**. Regulation of cell-type-specific transcriptomes by microRNA networks during human brain development. Nat Neurosci. 2018 Nov 19. doi: 10.1038/s41593-018-0265-3. PMID:30455455; * co-first author; ** co-corresponding author

Bhaduri ANowakowski TJ Single-cell sequencing paints diverse pictures of the brain. Nature 2018 563(7729):38-39. PMID:30382219

Nowakowski TJBuilding blocks of the human brain. Science2018 362(6411):169 PMID:30309940

Bhaduri A, Nowakowski TJ, Pollen AA, Kriegstein AR. Identification of cell types in a mouse brain single-cell atlas using low sampling coverage.BMC Biol. 2018;16(1):113. PMID:30309354

Kosik KS, Nowakowski T. Evolution of New miRNAs and Cerebro-Cortical Development. Annu Rev Neurosci 2018 Apr 4. PMID:29618285

Nowakowski TJ* **, Bhaduri A*, Pollen AA*, Alvarado B, Mostajo-Radji MA, Di Lullo E, Haeussler, Sandoval-Espinosa C, Liu SJ, Velmeshev D, Ounadjela JR, Shuga J, Wang X, Lim DA, West JA, Leyrat AA, Kent WJ, Kriegstein AR** Spatiotemporal Gene Expression Trajectories Reveal Developmental Hierarchies of the Human Cortex, * co-first author; Science 2017 Dec 8;358(6368):1318-1323. doi: 10.1126/science.aap8809. ** co-corresponding author PMID:2921757

         News and Views: Telley and Jabaudon A mixed model of neuronal diversity Nature 2018

Bershteyn M, Nowakowski TJ, Sandoval-Espinosa C, Di Lullo E, Pollen AA, Nene A, Wynshaw-Boris A, Kriegstein AR. Neuroepithelial apoptosis, outer radial glial mitotic delay and disrupted migration in human lissencephaly, Cell Stem Cell (2017) PMID: 28111201

Müller S, Liu SJ, Di Lullo E, Malatesta M, Pollen AA, Nowakowski TJ, Kohanbash G, Aghi M, Kriegstein AR, Lim DA, Diaz A. Single-cell sequencing maps gene expression to mutational phylogenies in PDGF- and EGF-driven gliomas. Mol Syst Biol. 2016 PMID: 27888226

Nowakowski TJ,**, Pollen AA, Sandoval-Espinosa C, Kriegstein AR** A Two-Stage Model of Human Cerebral Cortex Development **co-corresponding author; Neuron (2016) ;91(6):1219-27. PMID: 27657449

Retallack H, Di Lullo E, Arias C, Knopp KA, Laurie MT, Sandoval-Espinosa C, Mancia Leon WR, Krencik R, Ullian EM, Spatazza J, Pollen AA, Mandel-Brehm C, Nowakowski TJ, Kriegstein AR, DeRisi JL. Zika virus cell tropism in the developing human brain and inhibition by azithromycin. PNAS (2016) PMID: 27911847

Diaz A, Liu SJ, Sandoval C, Pollen A, Nowakowski TJ, Lim DA, Kriegstein A. SCell: integrated analysis of single-cell RNA-seq data. Bioinformatics. 2016 Apr 19 pii: btw201

Liu SJ, Nowakowski TJ, Pollen AA, Lui JH, Horlbeck MA, Attenello FJ, He D, Weissman JS, Kriegstein AR, Diaz AA., Lim DA. Single-cell analysis of long non-coding RNAs in the developing human neocortex. Genome Biology 2016, 17:67

Research highlight: Chang HY, Ma Q. Single-cell profiling of lncRNAs in the developing human brain. Genome Biology 2016 17:67

Nowakowski TJ.*, Pollen, AA*., DiLullo, E., Sandoval-Espinosa, C., Bershteyn, M.B., Kriegstein AR. Expression Analysis Highlights AXL as a Candidate Zika Virus Entry Receptor in Neural Stem Cells; Cell Stem Cell 2016 18, 1-6; * co-first author;

Research highlight: Miner JJ, Diamond MS. Understanding How Zika Virus Enters and Infects Neural Target Cells. Cell Stem Cell. 2016 May 5;18(5):559-60

Pollen AA*, Nowakowski TJ*, Chen J, Retallack H, Sandoval-Espinosa C, Nicholas CR, Shuga J, Liu SJ, Oldham MC, Diaz A, Lim DA, Leyrat AA, West JA, Kriegstein AR. Molecular Identity of Human Outer Radial Glia During Cortical Development. Cell, 163: 55-61, 26406371 * co-first author;

Pollen AA*, Nowakowski TJ*, J Shuga*, X Wang*, AA Leyrat, JH Lui, N Li, L Szpankowski, B Fowler, P Chen, G Sun, M Thu, M Norris, R Lebofsky, D Toppani, D Kemp, M Wong, B Clerkson,  S Wu, L Knutsson, B Alvarado, J Wang, S Weaver, RC Jones, AP May, MA Unger, AR Kriegstein and JAA West. Low Coverage Single-Cell mRNA Seq Reveals Distinct Cell Populations and Activated Signaling Pathways in Primary Neural Tissue. Nature Biotechnology 2014; 32:1053-8. PMID: 25086649; *co-first author

News & Views in Nature Biotechnology: Streets AM, Huang Y. How deep is enough in single-cell RNA-seq? Nat Biotechnol. 2014 Oct;32(10):1005-6

Nowakowski TJ#, Mysiak KS, O'Leary T, Fotaki V, Pratt T, Price DJ. Loss of functional Dicer in mouse radial glia cell-autonomously prolongs cortical neurogenesis. Developmental Biology 2013; 82:530-7; PMID: 24012747; # - corresponding author;

Nowakowski TJ#, Fotaki V, Pollock A, Sun T, Pratt T, Price DJ. MicroRNA-92b regulates the development of intermediate cortical progenitors in embryonic mouse brain. Proceedings of the National Academy of Sciences USA. 2013; 110:7056-61; PMID: 23569256; # - corresponding author;

Nowakowski TJ#, Mysiak KS, Pratt T, Price DJ. Functional dicer is necessary for appropriate specification of radial glia during early development of mouse telencephalon. PLoS One. 2011; 6:e23013; PMID: 21826226; # - corresponding author;

Published work

Other Publications

Pratt T., Nowakowski TJ., Price DJ. MicroRNA and neocortical evolution. in Essentials of Noncoding RNA in Neuroscience: Ontogenetics, Plasticity of the Vertebrate Brain. Edition: 1st, Publisher: Elsevier; Imprint Academic Press, Editor: Davide De Pietri Tonelli, ISBN: 9780128044025